IRTG2403 - Regulatory Genome

 

 

We finally were able to visit the Duke University again after two years of online and hybid retreats in Berlin. 

 

 

14:30	Welcome - Greg Wray
14:40	Tim Reddy (Duke faculty)	Genome-wide assays of human and mouse regulatory element activity”
15:10	Irene Mota Gomez-Argente	3D chromatin organization during mammalian sex determination
15:30	Anna Monaco	Investigating cell-type specific allelic imbalance in Drosophila development and cis-regulatory evolution
15:55	Luna (virtual)	Epigenetic mechanism of information storage in drug addiction' 'Epigenetic mechanism of information storage in drug addiction'
16:20	BREAK
16:35	Freyda (virtual)	Quantifying the effects of single nucleotide variants in transcription factor binding sites
16:50	Birthe  (virtual)	Establishing methods to study myogenic transcription factor binding during muscle development
17:05	Pascal Wetzel	Detecting footprints of transcription factors in single-cell data
17:20	Sebastian Röner	Modeling tissue specific open chromatin using deep learning”
17:45	Pia Rautenstrauch	Deep learning for multimodal single-cell data integration
18:00	LUNCH
19:00	Martin Kircher	Predicting the deleteriousness of genomic variants -- big and small
19:30	Aybuge Altay	Annotating scATAC-seq pseudobulk clusters & individual cells
19:55	Sebastian Prost	Discovery of a non-canonical GRHL1 binding motif using deep convolutional and recurrent neural networks”
20:10	Konstantin Papadakis	Conservation of neurogenic regulatory nodes from fly to mouse
20:35	Konrad Chudzik	Dissecting transcription regulation by the nuclear envelope during development

 

May 11th

14:30	Announcements - Greg Wray
14:35	Laleh.Haghverdi (virtual)and Carla Moelbert	Open Problems in Dimension-Reduction and Annotation of scRNA-seq data
15:05	Qianzi Zhou	Transcription Factor Networks Controlling Plant Root Cap Development
15:20	Che-Wei	Using deep learning to decode transcriptional specification of root cell fate
15:45	Till Schwämmle (virtual)	Distal and proximal cis-regulatory elements sense X chromosome dosage and developmental state at the Xist locus
16:10	BREAK
16:25	Dominika Vojtasova (virtual)	The Implication of Sleep Deprivation and Shank3 Mutation on Chromatin Architecture and Genome Regulation
16:50	Euphy Wu	Detecting Isoform-level Allelic Imbalance
17:10	Michael Love	Tidy analysis of genomic data
17:40	Federica Mosti	Unraveling the role of enhancer HAR1984 in neurodevelopment and human evolution
18:00	LUNCH
19:00	Olivier Boivin	The mutational cost of conflicts between transcriptional regulation and DNA replication in S. cerevisiae